Browsing by Author "Griffiths, Charles L."

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    The cushion–star Parvulastra exigua in South Africa : one species or more?
    (Pensoft, 2015-09) Payne, Robyn P.; Griffiths, Charles L.; Von der Heyden, Sophie; Koch, Erich
    The cushion–star Parvulastra exigua (Lamarck, 1816) is a widely distributed member of the temperate intertidal fauna in the southern hemisphere. In South Africa, it occurs in sympatry with the endemic Parvulastra dyscrita (Clark, 1923), the two species being differentiated predominantly by gonopore placement. Several recent studies have suggested that there may be additional cryptic species within the P. exigua complex in South Africa, based variously on color morphology, genetic evidence and the differential placement of the gonopores. This paper attempts to resolve whether one or more species are represented within P. exigua. A total of 346 P. exigua and 8 P. dyscrita were collected from sites on the west and south– west coasts of South Africa; morphological, anatomical and genetic analyses were performed to determine whether cryptic species and/or P. exigua specimens with aboral gonopores were present. Results show that neither cryptic species nor P. exigua specimens with aboral gonopores occur at these sites. This study thus refutes previous claims of the existence of aboral gonopores in South African P. exigua, and suggests that a single species is represented. The distinction between P. exigua and P. dyscrita is also confirmed, and features separating these two species are clarified and documented.
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    A dataset describing brooding in three species of South African brittle stars, comprising seven high-resolution, micro X-ray computed tomography scans
    (BioMed Central, 2015) Landschoff, Jannes; Du Plessis, Anton; Griffiths, Charles L.
    Background: Brooding brittle stars have a special mode of reproduction whereby they retain their eggs and juveniles inside respiratory body sacs called bursae. In the past, studying this phenomenon required disturbance of the sample by dissecting the adult. This caused irreversible damage and made the sample unsuitable for future studies. Micro X-ray computed tomography (μCT) is a promising technique, not only to visualise juveniles inside the bursae, but also to keep the sample intact and make the dataset of the scan available for future reference. Findings: Seven μCT scans of five freshly fixed (70 % ethanol) individuals, representing three differently sized brittle star species, provided adequate image quality to determine the numbers, sizes and postures of internally brooded young, as well as anatomy and morphology of adults. No staining agents were necessary to achieve highresolution, high-contrast images, which permitted visualisations of both calcified and soft tissue. The raw data (projection and reconstruction images) are publicly available for download from GigaDB. Conclusions: Brittle stars of all sizes are suitable candidates for μCT imaging. This explicitly adds a new technique to the suite of tools available for studying the development of internally brooded young. The purpose of applying the technique was to visualise juveniles inside the adult, but because of the universally good quality of the dataset, the images can also be used for anatomical or comparative morphology-related studies of adult structures.
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    A micro X-ray computed tomography dataset of South African hermit crabs (Crustacea: Decapoda: Anomura: Paguroidea) containing scans of two rare specimens and three recently described species
    (Oxford University Press, 2018-03-14) Landschoff, Jannes; Du Plessis, Anton; Griffiths, Charles L.
    Background: Along with the conventional deposition of physical types at natural history museums, the deposition of 3-dimensional (3D) image data has been proposed for rare and valuable museum specimens, such as irreplaceable type material. Findings: Micro computed tomography (μCT) scan data of 5 hermit crab species from South Africa, including rare specimens and type material, depicted main identification characteristics of calcified body parts. However, low-image contrasts, especially in larger (>50 mm total length) specimens, did not allow sufficient 3D reconstructions of weakly calcified and fine characteristics, such as soft tissue of the pleon, mouthparts, gills, and setation. Reconstructions of soft tissue were sometimes possible, depending on individual sample and scanning characteristics. The raw data of seven scans are publicly available for download from the GigaDB repository. Conclusions: Calcified body parts visualized from μCT data can aid taxonomic validation and provide additional, virtual deposition of rare specimens. The use of a nondestructive, nonstaining μCT approach for taxonomy, reconstructions of soft tissue structures, microscopic spines, and setae depend on species characteristics. Constrained to these limitations, the presented dataset can be used for future morphological studies. However, our virtual specimens will be most valuable to taxonomists who can download a digital avatar for 3D examination. Simultaneously, in the event of physical damage to or loss of the original physical specimen, this dataset serves as a vital insurance policy.
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    MicroCT imaging applied to description of a new species of Pagurus Fabricius, 1775 (Crustacea: Decapoda: Anomura: Paguridae), with selection of three-dimensional type data
    (Public Library of Science, 2018) Landschoff, Jannes; Komai, Tomoyuki; Du Plessis, Anton; Gouws, Gavin; Griffiths, Charles L.
    A new species of hermit crab, Pagurus fraserorum n. sp. (family Paguridae) is described from rocky subtidal reefs off KwaZulu-Natal, South Africa, and illustrated using both conventional drawings and colour photographs, and via three-dimensional (3D) X-ray micro-computed tomography (μCT). Because of the limitation μCT has in detecting very fine and soft structures, a novel approach of manually drawing setation and spinulation onto the twodimensional images of the 3D visualizations was used to illustrate the pereopods. In addition, an interactive figure and rotation movie clips in the supplement section complement the species description, and the 3D raw data of the 3D type data are downloadable from the Gigascience Database repository. The new species is the sixth species of Pagurus Fabricius, 1775 reported from South Africa and is closely allied to the Indo-Pacific P. boriaustraliensis Morgen, 1990 and P. pitagsaleei McLaughlin, 2002, from which it differs by its shorter ocular peduncles, by the armature of the carpus of the right cheliped, and also in colouration. This study presents the first description of a hermit crab in which a majority of taxonomic details are illustrated through 3D volume-rendered illustrations. In addition, colour photographs and COI molecular barcodes are provided, and the latter compared to COI sequences of specimens from Western Australia previously identified as P. boriaustraliensis and of specimens of P. pitagsaleei from Taiwan, as well as to three additional South African members of the genus. The South African taxon was confirmed to be genetically distinct from all species tested.
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    Use and usefulness of measures of marine endemicity in South Africa
    (Academy of Science of South Africa, 2015-10) Griffiths, Charles L.; Robinson, Tamara B.
    Numerous authors have cited numbers, or proportions, of endemic species within South(ern) African marine taxa, but comparisons between these statistics are confounded by differing definitions of regional boundaries and differences among data sets analysed. These have resulted in considerable variations in published endemicity data, even within the same taxonomic group. We tabulated and compared key endemicity statistics for regional marine taxa and explained biases in the data sets. The most comprehensive data sets available give overall marine endemicity within the national boundaries of South Africa as 28–33%, but estimates within individual taxa making up these totals vary enormously, from 0% (Aves, Mammalia) to over 90% (Polyplacophora). We also examined published data documenting localised endemicity patterns around the coastline. These consistently show the highest numbers of endemics occurring along the South Coast. There are logical biogeographical reasons to expect this trend, but endemicity rates are also inherently biased by distance from defined political boundaries and by differing sampling effort locally and in neighbouring countries. Range restriction is considered a better measure of conservation status than endemicity, although it is far less often used and yields very different patterns. Properly and consistently calculated measures of national endemicity do, however, retain significant conservation value, and the rates for South Africa marine biota are high relative to other regions globally, being exceeded only by New Zealand and Antarctica. It is important that when citing endemicity statistics, researchers and conservation managers understand the definitions used and the many constraints under which these measures are derived.