Doctoral Degrees (Plant Pathology)

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Browsing Doctoral Degrees (Plant Pathology) by Author "Moyo, Providence"

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    Identification and characterisation of diatrypaceae species associeated with declining grapevines and alternative hosts in South Africa
    (Stellenbosch : Stellenbosch University, 2017-03) Moyo, Providence; Halleen, Francois; Lizel Mostert; Stellenbosch University. Faculty of AgriSciences. Dept. of Plant Pathology.
    ENGLISH ABSTRACT: Grapevine trunk diseases have devastating impacts on the sustainability of viticulture, worldwide. Eutypa dieback, in particular, has caused large economic losses and premature mortality of vines. This disease has, for many years, been associated with the Diatrypaceae fungus, Eutypa (E.) lata. Several species of Diatrypaceae were, however, recently discovered to be associated with Eutypa dieback-affected grapevines in different grape growing areas including Australia, Chile, Spain and United States of America. No extensive study has been conducted to identify and characterise the species of Diatrypaceae in South Africa. Surveys were conducted in vineyards located in different grape growing regions of the Western Cape and Diatrypaceae fungi were isolated from grapevines with dying spurs or wood with wedge-shaped necrosis in cross section, as well as from perithecia on dead wood. Isolates were studied using phylogenetic analyses of combined DNA sequences of the internal transcribed spacer regions (ITS1 and ITS2) and 5.8S rRNA gene as well as partial β-tubulin gene. Morphological characteristics of perithecia were also studied. Morphological and phylogenetic analyses revealed the presence of seven Diatrypaceae species to occur on grapevine in South Africa, namely Cryptovalsa (C.) ampelina, C. rabenhorstii, E. consobrina, E. lata, Eutypella (Eu.) citricola, Eu. microtheca and E. cremea, which was described as a new species. The most common species isolated from dying spurs, in order of abundance, were C. ampelina (46.4% of total number of isolates), Eu. citricola (26.8%), E. lata (20.1%), E. cremea (4.3%), Eu. microtheca (1.2%), E. consobrina (0.6%) and C. rabenhorstii (0.6%). On the other hand, from wedge-shaped necrosis, E. lata represented the most frequent species (89.2% of all isolates obtained) followed by Eu. citricola (8.5%), E. cremea (1.4%) and C. ampelina (0.9%). Five species namely, E. lata, C. ampelina, E. cremea, Eu. citricola and Eu. microtheca were found to produce perithecia on dead grapevine wood. These results suggest that Eutypa dieback in South Africa can be associated with several Diatrypaceae species. Different fruit and ornamental trees occurring near vineyards were investigated to determine whether they are colonised by Diatrypaceae species, which are associated with Eutypa dieback of grapevine. Isolates of Diatrypaceae were collected from these trees showing symptoms of dieback, cankers and perithecia. Isolates were analysed by morphological and phylogenetic analyses as described above. Fourteen species namely, C. ampelina, E. consobrina, E. lata, Eu. citricola, Eu. microtheca, E. cremea, Cryptosphaeria (Cr.) multicontinentalis, Cr. ligniota, Diatrypella sp., Eu. leprosa, Eu. australiensis and three undescribed Eutypella species were identified from 29 different fruit and ornamental trees, occurring in close proximity to vineyards. The five most prevalent species were E. lata, C. ampelina, E. cremea, Eu. citricola and Eu. microtheca, which were also the most prevalent on grapevine. These findings suggest that cross infections are possibly occurring between grapevine and other woody hosts growing near vineyards in South Africa. These five species were also the only Diatrypaceae species isolated from stone fruit trees. Pathogenicity of these five Diatrypaceae species on stone fruit trees (apricot and plum) was also determined. In these pathogenicity studies, all five species were pathogenic on both apricot and plum, producing brown-red discolouration, typical of Eutypa dieback of apricot. Finally, pathogenicity of Diatrypaceae species identified from grapevine and other woody hosts in South Africa was evaluated on grapevine, under field conditions. Artificial inoculations of these fungal species were conducted on fresh pruning wounds and lignified shoots of Cabernet Sauvignon as well as green shoots of Cabernet Sauvignon and Sauvignon blanc. After 10 months, all the species caused disease symptoms (brown discolouration) on pruning wounds and lignified shoots of Cabernet Sauvignon. Disease symptoms were also observed on green shoots of both cultivars. Pathogenicity results revealed that several species including C. ampelina, Eu. microtheca, Eu. leprosa, and Eu. citricola were equally virulent as the well-known pathogen, E. lata. Quantitative real-time PCR (qPCR) assays were also developed for the detection and quantification of E. lata and C. ampelina in grapevine wood. The qPCR assays were specific and successfully quantified target taxa in artificially inoculated wood samples. The present study provides knowledge on the identity of Diatrypaceae species associated with declining grapevines and other woody hosts occurring adjacent to vineyards in South Africa. This knowledge, together with qPCR assays can be useful in early diagnosis of infection caused by Diatrypaceae species in vineyards. Furthermore, pathogenicity studies have shown that many Diatrypaceae species, including those obtained from other woody hosts, are pathogenic to grapevine. As such, this study forms the platform for further studies aimed at managing Diatrypaceae species causing disease on grapevine in South Africa.